Re-run this search with the SEG filter switched off
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGUG_05494
(392 letters)
Database: Seq/AA.fsa
85,676 sequences; 40,655,052 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
PGUG_05494 c7 complement(586042..587220) [1179 bp, 392 aa] 783 0.0 CPAR2_601810 Chr6 (429342..430595) [1254 bp, 417 aa] Putative de... 346 e-116 CORT0F02800 c6 (573831..575081) [1251 bp, 416 aa] putative debra... 330 e-110 CANTEDRAFT_104725 c15 (330888..332108) [1221 bp, 406 aa] 317 e-105 PICST_45555 Chr4 (449915..451345) [1431 bp, 476 aa] predicted pr... 306 e-100 DEHA2E08250g Chr5 (649567..651108) [1542 bp, 513 aa] weakly simi... 301 8e-98 SPAPADRAFT_143265 c7 (431701..432536,432657..433155) [1335 bp, 4... 297 8e-97 CLUG_03342 c4 complement(308964..310451) [1488 bp, 495 aa] 298 1e-96 LELG_04813 c7 complement(545212..546816) [1605 bp, 534 aa] 295 4e-95 orf19.3506 Chr6 (419093..420490) [1398 bp, 465 aa] Debranchase; ... 289 2e-93 CD36_62180 Chr6 (433057..434496) [1440 bp, 479 aa] Similar to S... 288 4e-93 CAWG_05162 c7 complement(623041..624435) [1395 bp, 464 aa] 288 6e-93 CTRG_02902 c3 (1933732..1935117) [1386 bp, 461 aa] 285 3e-92 YKL149C Chr11 complement(167617..168834) [1218 bp, 405 aa] RNA l... 229 8e-71 PGUG_02656 c3 (630955..634629) [3675 bp, 1224 aa] 35 0.26 CTRG_04012 c5 complement(701957..704806) [2850 bp, 949 aa] 32 3.7 CPAR2_200230 Chr2 complement(38676..39452) [777 bp, 258 aa] Prot... 30 6.3
>PGUG_05494 c7 complement(586042..587220) [1179 bp, 392 aa]
Length = 392
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/392 (96%), Positives = 377/392 (96%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY
Sbjct: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY
Sbjct: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
Query: 121 NESSFRKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITKWGDVN 180
NESSFRKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITKWGDVN
Sbjct: 121 NESSFRKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITKWGDVN 180
Query: 181 SLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGHRNXXXXXX 240
SLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGHRN
Sbjct: 181 SLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGHRNEEEIEI 240
Query: 241 XXXXXXXXXTVAKETRFLALDKCMPKRKFFAVVNIKSASADHALYLDKRAIAINKVIGNY 300
TVAKETRFLALDKCMPKRKFFAVVNIKSASADHALYLDKRAIAINKVIGNY
Sbjct: 241 SMEDESESSTVAKETRFLALDKCMPKRKFFAVVNIKSASADHALYLDKRAIAINKVIGNY 300
Query: 301 QPSLSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAPGGP 360
QPSLSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAPGGP
Sbjct: 301 QPSLSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAPGGP 360
Query: 361 VAPGLKSYPNNQTTEYVERYGIRSQRATQELS 392
VAPGLKSYPNNQTTEYVERYGIRSQRATQELS
Sbjct: 361 VAPGLKSYPNNQTTEYVERYGIRSQRATQELS 392
>CPAR2_601810 Chr6 (429342..430595) [1254 bp, 417 aa] Putative debranchase
Length = 417
Score = 346 bits (888), Expect = e-116, Method: Compositional matrix adjust. Identities = 187/416 (44%), Positives = 249/416 (59%), Gaps = 37/416 (8%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
+K+A+ GCCHG L+ IY+ +P+ T+LL+ICGDFQALRN SD + +SVP KYR LGDF Y
Sbjct: 4 LKVAIEGCCHGDLNKIYKGIPSSTELLLICGDFQALRNTSDYQALSVPEKYRRLGDFQSY 63
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
YT +K APVLT+F+GGNHE SSYL ELKYGGWVA NI+YLG+FG+V Y+G+ I G SGIY
Sbjct: 64 YTSKKKAPVLTIFIGGNHESSSYLQELKYGGWVAPNIYYLGEFGSVHYKGLSICGWSGIY 123
Query: 121 NESSF-RKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITKWGDV 179
N ++ K+ RLP+ +++RS YH + F+K D+D+ +SHDWP+ I K+GD
Sbjct: 124 NPHTYMNKSFNVERLPFDSNSIRSVYHQKLSNFLKMYLQRDMDIVLSHDWPVGIEKFGDK 183
Query: 180 NSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALV--------RLG 231
LL+ KPFF DI+KGQLGSP+N +LL L PR+WFS HLHVKF+A V ++
Sbjct: 184 YRLLKQKPFFTQDIKKGQLGSPLNNVLLHHLKPRYWFSGHLHVKFKANVNHNISKPKQVK 243
Query: 232 HRNXXXXXXXXXXXXXXXT------------VAKETRFLALDKCMPKRKFFAVVNIKSAS 279
+ N V +T+FLALDK P+R +F V+NI
Sbjct: 244 NANEILLDMESLDEASDGENQPQKKMKPNGHVVHDTQFLALDKYGPRRSYFEVINIPILE 303
Query: 280 ADH------ALYLDKRAIAINKVIGNY----QPSLSKFASTEILDLEKRQPQLHQEMAHA 329
+H LY DKRAIAIN+V+ Y + + EIL R P+ ++
Sbjct: 304 NNHPSVHDDGLYYDKRAIAINRVVEKYRIDQKTEFELMSPREIL----RDPRKLEKFIPL 359
Query: 330 IEKEYHRLNQEPERHFLASNLKFRQLAPGGPVAPGLKSYPNNQTTEYVERYGIRSQ 385
+ KE +NQ + F+ F +AP LK YPN QT EY ++GI Q
Sbjct: 360 VAKELEEINQIDDNQFVIPK-NFEVVAPAD-YDGELKYYPNAQTEEYCRKFGIPQQ 413
>CORT0F02800 c6 (573831..575081) [1251 bp, 416 aa] putative debranchase
Length = 416
Score = 330 bits (847), Expect = e-110, Method: Compositional matrix adjust. Identities = 183/420 (43%), Positives = 247/420 (58%), Gaps = 50/420 (11%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
+K+A+ GCCHG L IY+ +PA T+LL+ICGDFQALRN SD + ++VP KYR LGDF Y
Sbjct: 4 LKVAIEGCCHGDLYKIYKEIPASTELLLICGDFQALRNTSDFQALNVPEKYRRLGDFQSY 63
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
YTG+ APVLT+F+GGNHE SSYL ELKYGGWVA NI+YLGQFG+V Y+G+ + G SGIY
Sbjct: 64 YTGKNKAPVLTIFIGGNHESSSYLQELKYGGWVAPNIYYLGQFGSVHYKGLSVCGWSGIY 123
Query: 121 NESSFRKNEPD-PRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITKWGDV 179
+ ++ + +LPY S++RS YH + F+K D+D+ +SHDWP+ I ++G+
Sbjct: 124 SPHTYMNRSFNVEKLPYDPSSIRSVYHQKLPIFLKMYLKRDVDIVLSHDWPVGIEQYGNK 183
Query: 180 NSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGH------R 233
LL+ KP+F DI+KGQLGSP+N++LL L PR+WFS HLHVKFEA V R
Sbjct: 184 QKLLKQKPYFTQDIKKGQLGSPLNKVLLHHLKPRYWFSGHLHVKFEANVNHNKTELKPVR 243
Query: 234 NXXXXXXXXXXXXXXXT--------------VAKETRFLALDKCMPKRKFFAVVNIKSAS 279
N V +T F+ALDK P+R +F V ++ +
Sbjct: 244 NVNEISLDMDSLDGASDEEDQQQKKIKPNGHVGHDTHFIALDKYGPRRCYFEVKDVPISK 303
Query: 280 A-------DHALYLDKRAIAINKVIGNY----QPSLSKFASTEILDLEKRQPQLHQEMAH 328
+ D ALY DK+AIAIN+VI Y + + E+L + Q Q + +
Sbjct: 304 SNNYLSLNDDALYYDKQAIAINRVIERYIIDHKTEFELMSPREVL---RNQTQFDKFIP- 359
Query: 329 AIEKEYHRLNQEPERHF-LASNLKFRQLAPGGPVAPG-----LKSYPNNQTTEYVERYGI 382
+EKE LNQ + F + N G VAP LK +PN+QT EY ++ I
Sbjct: 360 LVEKELEELNQLNDEQFKIPRNF--------GVVAPADYDGELKYFPNDQTKEYCHKFDI 411
>CANTEDRAFT_104725 c15 (330888..332108) [1221 bp, 406 aa]
Length = 406
Score = 317 bits (811), Expect = e-105, Method: Compositional matrix adjust. Identities = 176/403 (43%), Positives = 242/403 (60%), Gaps = 25/403 (6%)
Query: 1 MKIAVVGCCHGLLDAIY-RAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHK 59
+KIAV GCCHG LD IY + + + LL+I GDFQALRN +DL I+VP KY+ LG FHK
Sbjct: 6 LKIAVQGCCHGELDLIYSKLIGKKVDLLVITGDFQALRNNTDLNAIAVPSKYKSLGHFHK 65
Query: 60 YYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGI 119
YY+G+K AP+ T+F+GGNHE SSYL ELKYGGWVA NI+YLG+FG + Y+G+RI G SGI
Sbjct: 66 YYSGQKRAPIPTIFIGGNHESSSYLTELKYGGWVAPNIYYLGEFGCLWYKGLRIVGASGI 125
Query: 120 YNESSFRKNE-PDPRLPYTDSTLRSAYHIRPKTFVKASFLE---DIDVFISHDWPLEITK 175
+N SSF N D LPYT T+RS YH+ P ++K ++ +ID+ +SHDWP I
Sbjct: 126 FNYSSFLDNRIEDVPLPYTPLTIRSVYHMTPMNYLKMMLIQSELNIDIVVSHDWPQYIYH 185
Query: 176 WGDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGHRNX 235
G ++ LL+ KPFF+ DI G+LGSP+ + + L P +WF +HLHVKFE V GH+
Sbjct: 186 QGGLDGLLKKKPFFKDDINSGRLGSPLLKNVFNHLRPTYWFLSHLHVKFEVDVP-GHQQL 244
Query: 236 XXXXXXXXXXXXX---------XTVAKETRFLALDKCMPKRKFFAVVNI----KSASAD- 281
+ + T FLALDKC R+ + N+ S D
Sbjct: 245 QKTKNTDEIDLDMGMDDTEEEEESSSLSTHFLALDKCGKHRRHLEIFNVLVDKNHISFDK 304
Query: 282 HALYLDKRAIAINKVIGNYQPSL--SKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQ 339
Y D+RAI INK++G + S + E+LD ++ + + IE+E + L+
Sbjct: 305 DDFYYDRRAIVINKLMGRFVVSDKGKQIKPKELLD-SSYTIKVLRVLNQEIEEELNSLSV 363
Query: 340 EPERHFLASNLKFRQLAPGGPVAPGLKSYPNNQTTEYVERYGI 382
PE + N F+ +AP G ++P L+ +PNNQT EY ++ I
Sbjct: 364 NPEDFKVPFN--FKVIAPSGLISPDLQFWPNNQTEEYCTKFDI 404
>PICST_45555 Chr4 (449915..451345) [1431 bp, 476 aa] predicted protein
Length = 476
Score = 306 bits (783), Expect = e-100, Method: Compositional matrix adjust. Identities = 140/236 (59%), Positives = 183/236 (77%), Gaps = 4/236 (1%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
+KIAV GCCHG L+AIYR++ LLIICGDFQA+RN +DL+T++VP+KY + DFH+Y
Sbjct: 8 VKIAVEGCCHGELNAIYRSLDDSVDLLIICGDFQAIRNQTDLDTMNVPKKYLRMADFHEY 67
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
Y+G KTAP+LT+F+GGNHECSSYL ELK+GGWVA NI+YLG++G+V YRGI+IAG SGIY
Sbjct: 68 YSGTKTAPILTIFIGGNHECSSYLTELKFGGWVAPNIYYLGEYGSVWYRGIQIAGWSGIY 127
Query: 121 NESSFRKN-EPDPRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKWGD 178
N SF N D LP+T ++RS YH +PK F+K S + D+DV +SHDWP+ I K+GD
Sbjct: 128 NHWSFLDNFLDDESLPFTPRSIRSVYHTKPKNFLKMSLMNHDLDVVLSHDWPVGIEKYGD 187
Query: 179 VNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRLGHRN 234
LLR K +F+ DI G+LGSP+N+ LL L PR+WFS HLH++F+A R+ +RN
Sbjct: 188 AQWLLRKKQYFKNDIRDGKLGSPLNKFLLGYLRPRYWFSGHLHIRFDA--RVSYRN 241
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 16/144 (11%)
Query: 254 ETRFLALDKCMPKRKFFAV--VNIKSASADH------ALYLDKRAIAINKVIGNY----Q 301
ET FLALDKC+P R+FF V V +K + H LY+ +R++AIN+V+ ++ +
Sbjct: 330 ETYFLALDKCLPHRRFFEVIEVEVKLQNLQHPSVKYDGLYMSRRSVAINRVVEDFVHKHK 389
Query: 302 PSLSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAP---G 358
+ + +I D R ++ E+ + E + L++ + F + F+ +AP
Sbjct: 390 QQFKEISWAQISDSPSRLTIIN-ELREVVLAELNSLSRRDDSDFEIRHDSFKIVAPIESK 448
Query: 359 GPVAPGLKSYPNNQTTEYVERYGI 382
A LK + NNQT +Y ++GI
Sbjct: 449 NTEAIPLKYWENNQTVDYCAKFGI 472
>DEHA2E08250g Chr5 (649567..651108) [1542 bp, 513 aa] weakly similar to
uniprot|P24309 Saccharomyces cerevisiae YKL149C DBR1 RNA
lariat debranching enzyme involved in intron turnover
Length = 513
Score = 301 bits (772), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 133/235 (56%), Positives = 180/235 (76%), Gaps = 6/235 (2%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
++IAV GCCHG LD IY+A+P + LL+ICGDFQA+RN+ DL+T+SVP KY+ LGDFH Y
Sbjct: 7 LRIAVEGCCHGELDKIYQALPDKLDLLLICGDFQAIRNMVDLKTMSVPEKYKKLGDFHDY 66
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
Y+G K APVLT+F+GGNHE SSYL ELKYGGWVA NI+YLG+FG V ++G++I GISGIY
Sbjct: 67 YSGVKVAPVLTIFIGGNHESSSYLKELKYGGWVAPNIYYLGEFGCVWFKGLQIGGISGIY 126
Query: 121 NESSF----RKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLED--IDVFISHDWPLEIT 174
N+ SF R + D +LPY T+RS Y ++ K ++K ++ +D+ +SHDWP I
Sbjct: 127 NQRSFYDSIRSDNKDEKLPYNPHTIRSIYQVKAKNYLKMYLMDHHRLDIVLSHDWPQHIE 186
Query: 175 KWGDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVR 229
K G++ LL+ K FF+ DI G LGSP+N +LL++L PR+WF++HLHV+F+ALV+
Sbjct: 187 KKGNLGKLLKEKHFFKADINNGTLGSPLNNVLLDRLKPRYWFASHLHVRFQALVK 241
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 27/155 (17%)
Query: 254 ETRFLALDKCMPKRKFFAVVNIK---------SASADHA-----------LYLDKRAIAI 293
ET FLALDKC+P+RKF ++ I+ S S D+ LY DKR+IAI
Sbjct: 355 ETHFLALDKCLPRRKFLEIMEIEVPDENISHPSYSQDNKASLDLKTQQPLLYYDKRSIAI 414
Query: 294 NKVIGNYQPSLSKFAST----EILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASN 349
NKVI ++ K ++ + + +Q LH E+ I+ E ++L+ P
Sbjct: 415 NKVIESFIDGNLKIWNSIHQGDFYNFIHKQFDLHNELRDEIDFELNKLSNLPSDALQIDP 474
Query: 350 LKFRQLAP--GGPVAPGLKSYPNNQTTEYVERYGI 382
F+ +AP G P LK + NNQTTEY ++ +
Sbjct: 475 NSFQVIAPTSNGERIP-LKYWENNQTTEYCSKFQV 508
>SPAPADRAFT_143265 c7 (431701..432536,432657..433155) [1335 bp, 444 aa]
Length = 444
Score = 297 bits (760), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 176/439 (40%), Positives = 234/439 (53%), Gaps = 57/439 (12%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
++IA+ GC HG L+ IY + +T LL+I GDFQALR+ D + ++VP KYR LGDFH Y
Sbjct: 4 VRIAIQGCAHGELEQIYAKIDPKTDLLLILGDFQALRSTQDYQALNVPAKYRALGDFHSY 63
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
Y+G TAP LT+F+GGNHE S+YL ELKYGGWVA ++YLG+FG+V YRGI+IAG SGI+
Sbjct: 64 YSGALTAPCLTIFIGGNHENSAYLQELKYGGWVAPRMYYLGEFGSVWYRGIQIAGWSGIF 123
Query: 121 NESSF-RKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKWGD 178
N S+F R N + PY L S YH + F+K + D+DV +SHDWP+ I +GD
Sbjct: 124 NRSTFLRNNMYVEKPPYRRDELVSVYHQKLTAFIKLYMMNHDLDVVMSHDWPVGIEDYGD 183
Query: 179 VNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVRL-GHRNXXX 237
LL KPFF+ DIE +LGSP+N+ LL L PR+WFSAHLHV FEA V G N
Sbjct: 184 KRKLLALKPFFKKDIENKELGSPLNKFLLHHLRPRYWFSAHLHVLFEASVSYKGEVNSKE 243
Query: 238 XXXXXXXXXXXXTVAKETR----------------------------------------F 257
+ ET F
Sbjct: 244 QSKSSNNDEIALNMDDETEKEISNKDKINLDMDEEDLYLSNPQPKKTPPRMSPSDHSTNF 303
Query: 258 LALDKCMPKRKFFAVVNIKSASA--------DHALYLDKRAIAINKVIGNY----QPSLS 305
LALDKC +R + I A D+ LY +RAIAINKV+ Y +
Sbjct: 304 LALDKCGKRRIHLRHITITPDEAHQSHPSYKDNKLYYSRRAIAINKVLETYLKSHEDEFR 363
Query: 306 KFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAPGGPVAPGL 365
+ +IL+ + L E+ +E E +L+ + F+ F+ +AP L
Sbjct: 364 GINTRKILE-DPHNLVLVNELMPLVELELRKLSGMKDELFIVPE-SFKVVAPTEDDGSQL 421
Query: 366 KSYPNNQTTEYVERYGIRS 384
K YPNNQT EY +++ + S
Sbjct: 422 KFYPNNQTEEYCKKFDVVS 440
>CLUG_03342 c4 complement(308964..310451) [1488 bp, 495 aa]
Length = 495
Score = 298 bits (762), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 136/234 (58%), Positives = 174/234 (74%), Gaps = 5/234 (2%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
+K+ V GCCHG LD IY VP+ +LLIICGDF+ALRN +DLET+SVPRKY +GDFH+Y
Sbjct: 2 VKVVVEGCCHGDLDEIYANVPSLAELLIICGDFEALRNSADLETMSVPRKYLKMGDFHRY 61
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
Y+GEK APVLTVF+GGNHEC YL EL+YGGWVA NI+YLG +G V ++G+RI+GISGI+
Sbjct: 62 YSGEKKAPVLTVFIGGNHECLLYLRELQYGGWVAPNIYYLGHYGVVWFKGLRISGISGIW 121
Query: 121 NESSF-----RKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLEDIDVFISHDWPLEITK 175
N SF +KN P LPY+D T++S YH+ PK ++K D+ +SHDWP I K
Sbjct: 122 NYHSFISAMSKKNAPTYALPYSDQTIKSVYHVVPKNYLKLLLSLTSDIVVSHDWPQYIWK 181
Query: 176 WGDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVR 229
WG+ LLR KPFFR D++ G+LGSP+ + L +L PR+WFS HLH +F A V+
Sbjct: 182 WGNCAQLLRHKPFFRKDMDSGRLGSPLARNALGRLKPRYWFSLHLHTRFVANVK 235
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 251 VAKETRFLALDKCMPKRKFFAVVNI-----KSASADHALYLDKRAIAINKVIGNY-QPSL 304
+AK T FLALDKC+P+RKF V++I S D LY D R+IA+NKV+ ++ +
Sbjct: 364 IAKTTHFLALDKCLPRRKFIEVLDIDPLTENSIYHDSGLYHDARSIAVNKVVEDFVSTNF 423
Query: 305 SKFASTEILDL--EKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAP 357
S ++S DL R L E+ +I +E R+ E+ L F++ AP
Sbjct: 424 SVWSSINPHDLLHLDRIKGLINELEESISREIPRI----EKLDLKVPSNFQKCAP 474
>LELG_04813 c7 complement(545212..546816) [1605 bp, 534 aa]
Length = 534
Score = 295 bits (756), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 136/250 (54%), Positives = 179/250 (71%), Gaps = 19/250 (7%)
Query: 1 MKIAVVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFHKY 60
+K+A+ GCCHG L+ IY +PA T LL+ICGDFQALR +D + ++VP KY+ LGDFH+Y
Sbjct: 4 LKVAIEGCCHGELNKIYSLLPANTDLLLICGDFQALRCPADFQALNVPVKYQRLGDFHQY 63
Query: 61 YTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISGIY 120
YTG++ APVLT+F+GGNHE SSYL ELKYGGWVA NI+YLG+FG V Y G+RI G SGI+
Sbjct: 64 YTGQRVAPVLTIFIGGNHEASSYLQELKYGGWVAPNIYYLGEFGCVKYAGLRICGWSGIW 123
Query: 121 NESSFRKN------------EPDPRLPYTDSTLRSAYHIRPKTFVKASFLED-------I 161
N S+ ++ E + RLP+ +RS YH + K F+K + + I
Sbjct: 124 NHGSYTRSSWKNTIEELIQIEDEERLPFDGRLVRSVYHQKLKAFIKMYLMRNEKNSDNCI 183
Query: 162 DVFISHDWPLEITKWGDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLH 221
DV +SHDWPL I K+G+ + LLR KPFF+ D+EKG LGSP+N +L+ L PR+WFSAHLH
Sbjct: 184 DVVLSHDWPLGIVKYGNKHELLRKKPFFKNDLEKGWLGSPLNNVLIHHLRPRYWFSAHLH 243
Query: 222 VKFEALVRLG 231
VKFEA+++ G
Sbjct: 244 VKFEAVIKRG 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 32/156 (20%)
Query: 254 ETRFLALDKCMPKRKFFAVVNI-----------KSASADHALYLDKRAIAINKVIGNYQP 302
ET F ALDKC P+R+F AV I K A L D+RAIA+N+VI N
Sbjct: 379 ETTFTALDKCGPRRQFLAVKEIETSFDGAGSDGKDGIATFQLQYDQRAIAVNRVIENILI 438
Query: 303 S---------------LSKFASTEILDLEKRQP-QLHQEMAHAIEKEYHRLNQEPERHFL 346
S LS+ ++L R P +L + +EKE L++ +F
Sbjct: 439 SRDEIEDEDEKEETLNLSRLNPMDVL----RNPKELLSKFLPLVEKEIVALSKMDADNFF 494
Query: 347 ASNLKFRQLAPGGPVAPGLKSYPNNQTTEYVERYGI 382
KF + L YPNNQT EY ++G+
Sbjct: 495 VIPAKF-ETTVSSDYDGVLTYYPNNQTKEYCAKFGL 529
>orf19.3506 Chr6 (419093..420490) [1398 bp, 465 aa] Debranchase; homozygous
mutant accumulates lariat intermediates of mRNA splicing
Length = 465
Score = 289 bits (739), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 177/232 (76%), Gaps = 4/232 (1%)
Query: 1 MKIAVVGCCHGLLDAIYRAVP--AQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFH 58
+KIA+ GCCHG L+ IY ++P LL+ICGDFQ+LRN DL++++VP KY+ + DFH
Sbjct: 5 LKIAIEGCCHGELNDIYNSIPDIESLDLLLICGDFQSLRNKCDLQSLNVPLKYQRMADFH 64
Query: 59 KYYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISG 118
+YY+G++ APVLT+F+GGNHECSSYL ELKYGGWVA NI+YLG+FG++ Y+G++I G SG
Sbjct: 65 EYYSGKRKAPVLTIFIGGNHECSSYLQELKYGGWVAPNIYYLGEFGSIWYKGLQITGWSG 124
Query: 119 IYNESSFRKNEPD-PRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKW 176
I+N +F N + +LP+ T+RS YH + F+K + D+D+ +SHDWP+ I K+
Sbjct: 125 IFNYHTFIANNIEMEKLPFDSRTIRSVYHQKLANFLKMYMMNHDMDIVLSHDWPVGIEKY 184
Query: 177 GDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALV 228
G+V LL+ KPFFR DI++GQLGSP+N+ L+ L PR+WFS HLHVKFEA +
Sbjct: 185 GNVKRLLKLKPFFRDDIQRGQLGSPLNKFLIHYLRPRYWFSGHLHVKFEARI 236
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 255 TRFLALDKCMPKRKFFAVVNIKSASADH-------ALYLDKRAIAINKVIGNY----QPS 303
T FLALDKC +R+F + I+ + H LY KR+IAINKV+ Y +
Sbjct: 314 TEFLALDKCGKRRQFLDIKTIEVHNTSHPSFINAGKLYYSKRSIAINKVVEKYLNDNRQD 373
Query: 304 LSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQE-PERHFLASNLKFRQLAPGGP-- 360
++ + +IL ++ P L E+ IE ++ + + + F F+ +AP
Sbjct: 374 FTELNTKQILSNPQQFP-LVNELMPIIENDFKSMQKNITDEDFFMVPENFQTIAPTDDEH 432
Query: 361 VAPGLKSYPNNQTTEYVERYGI 382
LK YPNNQT EY E++GI
Sbjct: 433 TESKLKYYPNNQTLEYCEKFGI 454
>CD36_62180 Chr6 (433057..434496) [1440 bp, 479 aa] Similar to S. cerevisiae
DBR1; In S. cerevisiae: RNA lariat debranching
enzyme,involved in intron turnover; required for
efficient Ty1 transposition
Length = 479
Score = 288 bits (738), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 178/232 (76%), Gaps = 4/232 (1%)
Query: 1 MKIAVVGCCHGLLDAIYRAVP--AQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFH 58
+KIA+ GCCHG L+ IY ++P LL+ICGDFQ+LRN DL++++VP KY+ + DFH
Sbjct: 19 LKIAIEGCCHGELNTIYNSIPDIKSLDLLLICGDFQSLRNKCDLQSLNVPFKYQRMADFH 78
Query: 59 KYYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISG 118
+YY+G++ APVLT+F+GGNHECSSYL ELKYGGWVA NI+YLG+FG++ Y+G++I G SG
Sbjct: 79 EYYSGKRKAPVLTIFIGGNHECSSYLQELKYGGWVAPNIYYLGEFGSIWYKGLQITGWSG 138
Query: 119 IYNESSFRKNEPD-PRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKW 176
I+N +F N D +LP+ +T+RS YH + F+K + D+D+ +SHDWP+ I K+
Sbjct: 139 IFNYHTFIANHIDMEKLPFDSTTIRSVYHQKLSNFLKMYMMNHDMDIVLSHDWPVGIEKY 198
Query: 177 GDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALV 228
G++ LL+ KPFF+ DI++GQLGSP+N+ L+ L PR+WFS HLHVKFEA +
Sbjct: 199 GNLKRLLKLKPFFKDDIQRGQLGSPLNKFLIHYLRPRYWFSGHLHVKFEARI 250
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 255 TRFLALDKCMPKRKFFAVVNIKSASADH-------ALYLDKRAIAINKVIGNY----QPS 303
T FLALDKC +R+F + ++ + H LY KR+IAINKV+ Y +
Sbjct: 328 TEFLALDKCGKRRQFLEIKTVEVNNTSHPSFINPGKLYYSKRSIAINKVVEKYLNDNRQD 387
Query: 304 LSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQE-PERHFLASNLKFRQLAPGGP-- 360
+ + +IL+ + P L E+ IE E+ + + + F F+ +AP
Sbjct: 388 FTDLNTKQILNNPQLFP-LVNELMPIIENEFKSMQKNITDEDFFMVPENFQIVAPTNDEC 446
Query: 361 VAPGLKSYPNNQTTEYVERYGI 382
+ LK YPNNQT EY E++GI
Sbjct: 447 IESKLKYYPNNQTLEYCEKFGI 468
>CAWG_05162 c7 complement(623041..624435) [1395 bp, 464 aa]
Length = 464
Score = 288 bits (736), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 177/232 (76%), Gaps = 4/232 (1%)
Query: 1 MKIAVVGCCHGLLDAIYRAVP--AQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFH 58
+KIA+ GCCHG L+ IY ++P LL+ICGDFQ+LRN DL++++VP KY+ + DFH
Sbjct: 5 LKIAIEGCCHGELNDIYNSIPDIESLDLLLICGDFQSLRNKCDLQSLNVPLKYQRMADFH 64
Query: 59 KYYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISG 118
+YY+G++ APVLT+F+GGNHECSSYL ELKYGGWVA NI+YLG+FG++ Y+G++I G SG
Sbjct: 65 EYYSGKRKAPVLTIFIGGNHECSSYLQELKYGGWVAPNIYYLGEFGSIWYKGLQITGWSG 124
Query: 119 IYNESSFRKNEPD-PRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKW 176
I+N +F N + +LP+ T+RS YH + F+K + D+D+ +SHDWP+ I K+
Sbjct: 125 IFNYHTFIANNIEMEKLPFDSRTIRSVYHQKLANFLKMYMMNHDMDIVLSHDWPVGIEKY 184
Query: 177 GDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALV 228
G++ LL+ KPFFR DI++GQLGSP+N+ L+ L PR+WFS HLHVKFEA +
Sbjct: 185 GNLKRLLKLKPFFRDDIQRGQLGSPLNKFLIHYLRPRYWFSGHLHVKFEARI 236
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 255 TRFLALDKCMPKRKFFAVVNIKSASADH-------ALYLDKRAIAINKVIGNY----QPS 303
T FLALDKC +R+F + I+ + H LY KR+IAINKV+ Y +
Sbjct: 314 TEFLALDKCGKRRQFLDIKTIEVHNTSHPSFINAGKLYYSKRSIAINKVVEKYLNDNRQD 373
Query: 304 LSKFASTEILDLEKRQPQLHQEMAHAIEKEYHRLNQE-PERHFLASNLKFRQLAPGGP-- 360
++ + +IL ++ P L E+ IE ++ + + + F F+ +AP
Sbjct: 374 FTELNTKQILSNPQQFP-LVNELMPIIENDFKSMQKNITDEDFFMVPENFQTIAPTDDEH 432
Query: 361 VAPGLKSYPNNQTTEYVERYGI 382
LK YPNNQT EY E++GI
Sbjct: 433 TESKLKYYPNNQTLEYCEKFGI 454
>CTRG_02902 c3 (1933732..1935117) [1386 bp, 461 aa]
Length = 461
Score = 285 bits (730), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 125/233 (53%), Positives = 178/233 (76%), Gaps = 4/233 (1%)
Query: 1 MKIAVVGCCHGLLDAIYRAVP--AQTKLLIICGDFQALRNLSDLETISVPRKYRHLGDFH 58
+KIA+ GCCHG L+ IY+ + LL+ICGDFQ++RN SDL++ISVP KY+ + DFH
Sbjct: 4 IKIAIEGCCHGELNKIYQRLSDIPDISLLLICGDFQSIRNESDLQSISVPEKYKRMADFH 63
Query: 59 KYYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAGISG 118
+YY GE+ AP+LT+F+GGNHECSSYL ELKYGGWVA NI+YLG+FG++ Y GI+I G SG
Sbjct: 64 EYYKGERKAPILTIFIGGNHECSSYLQELKYGGWVAPNIYYLGEFGSLWYNGIQITGWSG 123
Query: 119 IYNESSF-RKNEPDPRLPYTDSTLRSAYHIRPKTFVKASFLE-DIDVFISHDWPLEITKW 176
I+N SF +N ++PY +LRS YH + + F+K + D+D+ +SHDWP+ I ++
Sbjct: 124 IFNYHSFVNQNIQMEKIPYDQGSLRSVYHTKLQNFLKMYMMNHDMDIIMSHDWPVGIERY 183
Query: 177 GDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEALVR 229
G+ + L++ KPFF+ DI++G+LGSP+N+ L+ L PR+W+S HLHVKFEA+++
Sbjct: 184 GNQSKLIKMKPFFKEDIKRGELGSPLNKFLIHYLRPRNWYSGHLHVKFEAIIK 236
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 254 ETRFLALDKCMPKRKFFAVVNIKSASADHA------LYLDKRAIAINKVIGNY----QPS 303
+T+FLALDKC KR F V ++ H LY KRAIAIN+V+ +Y Q
Sbjct: 318 DTKFLALDKCGNKRNFLEVQTVEITHPTHPSAGKSRLYFSKRAIAINRVVESYLQQHQEE 377
Query: 304 LSKFASTEILDLEKRQPQ---LHQEMAHAIEKEYHRLNQEPERHFLASNLKFRQLAPGGP 360
K + EIL R P L E+ ++ E +L+ F +AP
Sbjct: 378 FYKIDTKEIL----RNPHNFPLVNELMRLVDLEAKKLSTSMNDEEFIVPENFEIIAPV-K 432
Query: 361 VAPGLKSYPNNQTTEYVERYGI 382
LK YPNNQT EY E++ I
Sbjct: 433 CKDELKYYPNNQTQEYCEKFNI 454
>YKL149C Chr11 complement(167617..168834) [1218 bp, 405 aa] RNA lariat
debranching enzyme, involved in intron turnover;
required for efficient Ty1 transposition
Length = 405
Score = 229 bits (583), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 183/328 (55%), Gaps = 45/328 (13%)
Query: 1 MKIAVVGCCHGLLDAIYRAVP---AQT--KLLIICGDFQALRNLSDLETISVPRKYRHLG 55
++IAV GCCHG L+ IY+ V A+T LLII GDFQ++R+ D ++I++P KY+ LG
Sbjct: 4 LRIAVQGCCHGQLNQIYKEVSRIHAKTPIDLLIILGDFQSIRDGQDFKSIAIPPKYQRLG 63
Query: 56 DFHKYYTGEKTAPVLTVFVGGNHECSSYLDELKYGGWVAKNIFYLGQFGAVVYRGIRIAG 115
DF YY E APV T+F+GGNHE +L L +GG+VAKNIFY+G + ++GIRI
Sbjct: 64 DFISYYNNEIEAPVPTIFIGGNHESMRHLMLLPHGGYVAKNIFYMGYSNVIWFKGIRIGS 123
Query: 116 ISGIYNESSFRKNEPDPRLPYTD-------STLRSAYHIRPKTFVKASFLED-IDVFISH 167
+SGI+ E F K PD + D + +R+ YH+R ++ ID+ +SH
Sbjct: 124 LSGIWKEWDFNKQRPD----WNDLENNNWKANIRNLYHVRISDIAPLFMIKHRIDIMLSH 179
Query: 168 DWPLEITKWGDVNSLLRSKPFFRLDIEKGQLGSPVNQLLLEKLMPRHWFSAHLHVKFEAL 227
DWP + GD LL+ KPFF DI++G+LGSPV LL L P+ W SAHLHV+F A
Sbjct: 180 DWPNGVVYHGDTKHLLKLKPFFEQDIKEGKLGSPVTWQLLRDLRPQWWLSAHLHVRFMAS 239
Query: 228 VRLGHR-----NXXXXXXXXXXXXXXXTVAK----------------------ETRFLAL 260
++ R N ++ ETRFLAL
Sbjct: 240 IKHNKRSHEPPNKSTSKTKKNNNEIDLDLSSDEDERSGIMNCQEENEYDSKYGETRFLAL 299
Query: 261 DKCMPKRKFFAVVNIKSASADHALYLDK 288
DKC+P+R++ ++ I+ ++ HA + D+
Sbjct: 300 DKCLPRRRWLEILEIEPDTS-HASWKDE 326
>PGUG_02656 c3 (630955..634629) [3675 bp, 1224 aa]
Length = 1224
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 259 ALDKCMPKRKFFAVVNIKSASADHALYLD-------KRAIAINKVIGNYQPSL--SKFAS 309
L K R+ + ++ SA +HA D +RA+ + I QP L SK +
Sbjct: 251 VLSKQKQLRRAIVLTDVLSAQTEHAELKDVPLTLLAQRALRVRPKIVQPQPHLLASKLKT 310
Query: 310 TEILDLEKRQPQLHQEMAHAIEKEYHRLNQEPERHFLASN 349
++L+ +KR+ LH E I +N ERH+ N
Sbjct: 311 RQLLEAKKREHLLHVEKVRGILDAVEEINARKERHWTHRN 350
>CTRG_04012 c5 complement(701957..704806) [2850 bp, 949 aa]
Length = 949
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 5 VVGCCHGLLDAIYRAVPAQTKLLIICGDFQALRNLSDLETISVPRKYR--------HLGD 56
V+ CC G+LD ++ + +++I L LS+ E I P YR + +
Sbjct: 874 VLDCCIGVLDLEKSSIIRRAAIVVI---HDVLVALSEKENIEFPADYRDRVKTALGYTAE 930
Query: 57 FHK-YYTGEKTAPVLTVF 73
F K Y T E VLT F
Sbjct: 931 FDKDYLTKEHAKKVLTYF 948
>CPAR2_200230 Chr2 complement(38676..39452) [777 bp, 258 aa] Protein similar to
S. cerevisiae Iah1p, which is involved in acetate
metabolism
Length = 258
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 124 SFRKNEPDPRLPYTDSTLRSAYHIRPKTF--VKASFLEDIDV----FISHDWPLEITKWG 177
SFRK+ P+ ++ S L H PK + + + + I+ F+ P ++ WG
Sbjct: 186 SFRKDSPESQVGSLGSYLNDGIHFTPKAYKILHTAIMNTIEQHYPEFLPESLPYKLAYWG 245
Query: 178 DVN 180
D++
Sbjct: 246 DID 248
Database: Seq/AA.fsa
Posted date: Feb 8, 2013 12:45 PM
Number of letters in database: 40,655,052
Number of sequences in database: 85,676
Lambda K H
0.322 0.138 0.416
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 85676 Number of Hits to DB: 30,170,011 Number of extensions: 1301673 Number of successful extensions: 3323 Number of sequences better than 10.0: 19 Number of HSP's gapped: 3362 Number of HSP's successfully gapped: 30 Length of query: 392 Length of database: 40,655,052 Length adjustment: 110 Effective length of query: 282 Effective length of database: 31,230,692 Effective search space: 8807055144 Effective search space used: 8807055144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)